Scaffold Ga0307996_1000096

Overview

Basic Information

• Taxon OID: 3300031589
• Scaffold ID: Ga0307996_1000096
• Source Dataset Name: Marine microbial communities from David Island wharf, Antarctic Ocean - #35
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23595
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (91.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5781
  • Long. (^o): 77.9617
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008578	Metagenome / Metatranscriptome	331	Y
F012508	Metagenome / Metatranscriptome	280	Y
F057679	Metagenome / Metatranscriptome	136	N
F081780	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307996_100009613	F008578	AGGA	MVSNRELENVVSQVNVKFEELFNKLAQLEKQIADNVGATDGNAKKGKSKG
Ga0307996_100009618	F081780	AGG	MVKFMKNKREVNTLVKQLKAGGFTVTDSDGWVKALDDDDTEVMTAMPHSNGSYMLRLNDNYFA
Ga0307996_10000962	F057679	GAG	MDRVKQFWRSRSNRWQVFGITLAALQVYVFQLNLSAETIMLASILFGMGGIFFRYQTTQSMAEKL
Ga0307996_100009626	F012508	AGGA	MSKIKEELLGYEYEPSEWIEPEAQNMVNELIEYQVYCMPLSELMARVTKQMTDEYYNNSYENMTKRYNEVFK