NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302137_1121824

Scaffold Ga0302137_1121824


Overview

Basic Information
Taxon OID3300031588 Open in IMG/M
Scaffold IDGa0302137_1121824 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CBN3_SCM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)973
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)80.9595Long. (o)-132.1842Alt. (m)Depth (m)45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005832Metagenome / Metatranscriptome389Y
F070548Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0302137_11218243F005832GGGGGMSKEGIWQDSDGMKDSEIVKKWTKVLHTVEDTVEQLKYQKAALIKKREDIVNSKETKNG
Ga0302137_11218244F070548AGGAMANWNSKELQTPDAIKKIGQNAQNAIDNLDILLKLVKQGSEVAKLFLLLSNPAGALIKLAADEIIKAANDYKEIGMFYLFINPNDPGYGNQTSRELGLAIKRDGL

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