Scaffold Ga0302137_1009832

Overview

Basic Information

• Taxon OID: 3300031588
• Scaffold ID: Ga0302137_1009832
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CBN3_SCM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4330
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 80.9595
  • Long. (^o): -132.1842
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008341	Metagenome / Metatranscriptome	335	Y
F015662	Metagenome / Metatranscriptome	253	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302137_10098327	F015662	GAG	MGIMKKQLIEELIEDEIAQIDFVEISSEESARVELEVDLARERAREFRQMEMYDDPYLNWSGHR
Ga0302137_10098328	F008341	AGG	MSEALRKIVVETMVPANFNFMARDLDGSVHVFENEPNLDYGTNKNPLPCDMWDDPSGGNTRPVSFKTDTDAGDFTEELGDWRDSCVEITEFTAGGN