Scaffold Ga0315308_1017181

Overview

Basic Information

• Taxon OID: 3300031587
• Scaffold ID: Ga0315308_1017181
• Source Dataset Name: Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - TDP3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 3632
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Freshwater Sediment Microbial Communities From Lake Towuti, South Sulawesi, Indonesia

Source Dataset Sampling Location

• Location Name: Indonesia: South Sulawesi
• Coordinates
  • Lat. (^o): -2.7726
  • Long. (^o): 121.4938
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006410	Metagenome	374	Y
F012730	Metagenome	278	Y
F106037	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315308_10171813	F012730	N/A	MCLRKALGEVDFEEMKGKTFTEIRVTEKLCEVCDKPIRADETIVKTIEISDYSSYSNLLTRQRAHDRVEVDLEENKIYLYHHDYPGEVHPGCIEKL
Ga0315308_10171815	F006410	AGAAGG	LAEKPKIPPERAKEIQERARERSLIVKELKNQGPQTLDELSKVTGIEKEKLFKHMIAMRQFGKVAITGERDNQLVYSLPEGQ
Ga0315308_10171817	F106037	GAG	MSKVSLRECYFIKSSGANIDYLIDKVKAAIEEVGVPPKYHINVYKNVYACCGVSGTGLIVEVTGPSEKKIKGIDLKAVAKILELCEKEKIEHHHFEPLEIG