Scaffold Ga0315308_1001876

Overview

Basic Information

• Taxon OID: 3300031587
• Scaffold ID: Ga0315308_1001876
• Source Dataset Name: Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - TDP3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 11973
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (35.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Freshwater Sediment Microbial Communities From Lake Towuti, South Sulawesi, Indonesia

Source Dataset Sampling Location

• Location Name: Indonesia: South Sulawesi
• Coordinates
  • Lat. (^o): -2.7726
  • Long. (^o): 121.4938
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030967	Metagenome	183	Y
F079544	Metagenome	115	Y
F102444	Metagenome / Metatranscriptome	101	Y
F104375	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315308_10018762	F079544	N/A	VTEEKNLKRKIPRGRRGVSTIYTSLISLLLVFSILTLLFLTFVSYNLAVQEQMRIEHERSQEEIVISGLVLNETDLTISHVVVNNTGTIEVKIRAIYVTNSTTTTLICDPSTYMDTHIAPSESLRIRLPGGVAFEPNAKITVATERGVKTKEYEGILIFGSPKPRWKYNPSRLYIGPLMLQFDAFWYRKTFQNGNLDPNDRWHLGWSIPKGFGYCAWNITIMNIDDRNITINRFSSFTAVPNDSPSSELSWYLEPTNQTDLTHFLAVNQTQNIIYIWSTPKRFPEEGGTNSAQKMTLPECTCMVFLTFFGVFHEHDGTTTTYAQTIPFEAAITVEQQ
Ga0315308_10018763	F102444	N/A	MVITLKISGDCRALSPIFASLVILAIVTVLFIPVFIWSTGLTAETRSFWEISGLIATERIVIEEVNLRGNVTSCTIYVRNIGKTAIIVDDIFISLPDGSLHKYEKPQFSTDFDSVVQGDLMTINILDLGFTPTSDETYTVKVFTTRGVGDTYQVVA
Ga0315308_10018767	F104375	GAGG	LDCPECHGTLVLPNGLNGEIICKRCGLVISQVRNSPGFTNWTPKWFSNWNEDDSDTLREWLTTLRTLSCQLNLPNFPYREEAARLIRLKSDMFFRSQRFGKNKREAVTALVHLILRKYNEIRPLKEICERLSLDHRLVMKYAWAMRKMTNFHRTFSAKDYLRKYGWKLTSDAELIQTAEQLLTNIRKEISGNPISLAAGALYFVCKSRKMRVSKDEIGEAFHISGRTVYSNERRISRVMSTKGFEF
Ga0315308_10018768	F030967	GAGG	MDVAKLNRLEELEKRLKKLENHGFEDTLTLVEILSNVTFFGGLKMEKCKYAKEGQCGFFFLGSDAKKKIPIATDCRIRYCEGEPGHCHLELANVTCAFCPDYVPRAPNSENQK