Scaffold Ga0315541_1000757

Overview

Basic Information

• Taxon OID: 3300031586
• Scaffold ID: Ga0315541_1000757
• Source Dataset Name: Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-190
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33253
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 53 (92.98%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh Sediment → Salt Marsh Sediment Microbial Communities From The Plum Island Ecosystem Lter, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.722
  • Long. (^o): -70.847
  • Depth (m): 1.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046170	Metagenome / Metatranscriptome	151	Y
F071959	Metagenome / Metatranscriptome	121	Y
F074370	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315541_100075749	F074370	AGGGGG	MADEMAEKLAEAKKKMFGAQQPSGKIIMLVKGDTLFKCADPKVEVRQQE
Ga0315541_100075754	F071959	AGGAGG	MASRNSLIHSNDMSLSDKKRYRLTALAAGLERTGHVNIGSINADVPGLQAIPDVNKAARVAAIAAYIETGAWPVTIDQRELAPLTDLVIAAAQDSWLTAALAVIGTAYTCLNAVAAPQLIVGKLMVCYAVSVESAVVPMPVSRLIFRKGGAVGNIQAQFDMEPMGVRLETDAFFSEPVIIDPNDVFAIQVLCRAIAVATRVHIHNFVYEASGTVIA
Ga0315541_100075755	F046170	AGGAGG	MIRIEDFGEIGYGGAVTLTEWWDNKRIDEGKIGTKDVFKKASFYTYLGVGLAATLMSVFGWMRRYERWSEHVSHGFLYDVPRFAYNLTKALGAGSKRSGTESRAVSEAQRILNEKLRTKALTQGGGRTAERSYQREFESVAPYAF