Basic Information | |
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Taxon OID | 3300031586 Open in IMG/M |
Scaffold ID | Ga0315541_1000355 Open in IMG/M |
Source Dataset Name | Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-190 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 48617 |
Total Scaffold Genes | 79 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 55 (69.62%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh Sediment → Salt Marsh Sediment Microbial Communities From The Plum Island Ecosystem Lter, Massachusetts, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Massachusetts | |||||||
Coordinates | Lat. (o) | 42.722 | Long. (o) | -70.847 | Alt. (m) | Depth (m) | 1.9 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F031354 | Metagenome / Metatranscriptome | 182 | Y |
F059653 | Metagenome / Metatranscriptome | 133 | Y |
F069660 | Metagenome / Metatranscriptome | 123 | Y |
F091296 | Metagenome / Metatranscriptome | 107 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0315541_100035543 | F069660 | GAGG | MSSILKLLALIGGIVPIILTLIKEFETPGFGAEKKKAIMDAIALFYDKLAEGNVLPITKEKLLGIASGFIDIAVAFFNLVGWFKHGNPTVST |
Ga0315541_100035564 | F031354 | AGGA | MKTTFDINDILYPIINVDPVKATIDGRVYRNKKPLNSELQDIIIIPLSNYNGDEIINDATFMINCYCKNFNNGTPDITKLRAITDAVIAKIEAYNNTSKYYIFDIVSQILLPDVDQKSMSYVNLRINCFIEK |
Ga0315541_100035566 | F091296 | GGA | MVIKRYPHTATLSYYGAGTTSSIGIYTPGTLVTIGIICNAQPNSTKYIIGESGNMIGYNWFISSPLFAGAGSVPKAAKLTFFSKEHIILQLFEYQKHIEMKC |
Ga0315541_100035567 | F059653 | GAG | LIPKCRLPEHGVHNLNIMNNKESLQSLTEYENDNLLEKLLLDRGVATGGTYSAANAKDIDLCAADLYFTLAAHPDLKEGSFTIKYSGAQLIAMAKRILQKYDMDEPTVNGEAVW |
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