Scaffold Ga0308132_1048613

Overview

Basic Information

• Taxon OID: 3300031580
• Scaffold ID: Ga0308132_1048613
• Source Dataset Name: Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CB21_1111_SCM (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 884
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 74.0136
  • Long. (^o): -139.5971
  • Depth (m): 83

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003834	Metagenome / Metatranscriptome	466	N
F050676	Metagenome / Metatranscriptome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308132_10486131	F050676	GGAGG	MQTKLPVKSRVADKYQPMLTYYAELIGLCHETVTRTESLKMLDPMGKKTTATSLFIRVCQRMDKSIDAKEVADKLETISKTNEQRSQAIXVVVKHPYDKLRWII
Ga0308132_10486132	F003834	AGGAG	MSSSKTPIRQAEMDYLDHFMETKYDERKNVLKTEMQDTIDTESEENFDAFKEKLKLTKLHEDVRINFDDHEKFANEMDSTLLLKKGKLDNSINDLEVKLENWKKVRKWNTEIERSLIKHPDELDRLLKKICHEETSRDFYSGPRGKALQMLDMSKEYCKNLLNAGQSLATVWGVVGKEMAKEKINTSTVPKPEFL