NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307376_10426633

Scaffold Ga0307376_10426633


Overview

Basic Information
Taxon OID3300031578 Open in IMG/M
Scaffold IDGa0307376_10426633 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - TR-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)868
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011484Metagenome290Y
F026864Metagenome196Y
F033321Metagenome177Y

Sequences

Protein IDFamilyRBSSequence
Ga0307376_104266332F026864GGAGMSEQDKMIEYVFTVVIATANKSFDVQLWDFAGDEPKHLAGGEGSNWRTALGQALSKIELPIDKVDKTVNDLVKEAQEDEGV
Ga0307376_104266334F033321AGGAGGVSRELEVLREEYWRARENPIFDNPADYCILLDLITDRIEKLEEGEDKNG
Ga0307376_104266335F011484N/AQGMKDLEQFLNVEAEWVLERLSTSTEANDRNYYQGRIDQLAQVRRLLNHPQILRQEATA

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