Basic Information | |
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Taxon OID | 3300031578 Open in IMG/M |
Scaffold ID | Ga0307376_10426633 Open in IMG/M |
Source Dataset Name | Soil microbial communities from Risofladan, Vaasa, Finland - TR-2 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 868 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland |
Source Dataset Sampling Location | ||||||||
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Location Name | Finland: Risofladan, Vaasa | |||||||
Coordinates | Lat. (o) | 63.0472 | Long. (o) | 21.7116 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F011484 | Metagenome | 290 | Y |
F026864 | Metagenome | 196 | Y |
F033321 | Metagenome | 177 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0307376_104266332 | F026864 | GGAG | MSEQDKMIEYVFTVVIATANKSFDVQLWDFAGDEPKHLAGGEGSNWRTALGQALSKIELPIDKVDKTVNDLVKEAQEDEGV |
Ga0307376_104266334 | F033321 | AGGAGG | VSRELEVLREEYWRARENPIFDNPADYCILLDLITDRIEKLEEGEDKNG |
Ga0307376_104266335 | F011484 | N/A | QGMKDLEQFLNVEAEWVLERLSTSTEANDRNYYQGRIDQLAQVRRLLNHPQILRQEATA |
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