Scaffold Ga0307376_10310409

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307376_10310409

Scaffold Ga0307376_10310409

Overview

Basic Information
Taxon OID	3300031578 Open in IMG/M
Scaffold ID	Ga0307376_10310409 Open in IMG/M
Source Dataset Name	Soil microbial communities from Risofladan, Vaasa, Finland - TR-2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1052
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location Name	Finland: Risofladan, Vaasa
Coordinates	Lat. (^o)	63.0472	Long. (^o)	21.7116	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007747	Metagenome / Metatranscriptome	345	Y
F020510	Metagenome / Metatranscriptome	223	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307376_103104092	F007747	AGGAG	VKSIGKLTFGKSRPAPKQVLVDINYDAKMAKELYAIGLACIKKDPEAVIEYIIVKALKAWAKK
Ga0307376_103104094	F020510	AGGCGG	VSLADLLVMFSARIVARYTPEQYAQQVIVARNNRMRWGIGQW

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