NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307376_10262229

Scaffold Ga0307376_10262229


Overview

Basic Information
Taxon OID3300031578 Open in IMG/M
Scaffold IDGa0307376_10262229 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - TR-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1162
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018478Metagenome235Y
F099320Metagenome103N
F100003Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0307376_102622292F099320N/AMEENVYSYCLEVHEDGQLYMVTEYNNGYITIWPANATIEDEGEVYFINLHE
Ga0307376_102622293F100003N/AMKIKKKHYKALQYASLIQRWKYLPYNFIFEVVQNSEIDEYKLNRNRQEQNGKRI
Ga0307376_102622294F018478GAGMVKEFEEMDWSKNYKYKDKKIYISYETKKYILCSFYESGKGTFKLDKTEFHG

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