NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307376_10261476

Scaffold Ga0307376_10261476


Overview

Basic Information
Taxon OID3300031578 Open in IMG/M
Scaffold IDGa0307376_10261476 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - TR-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1164
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005194Metagenome / Metatranscriptome409N
F025462Metagenome / Metatranscriptome201N

Sequences

Protein IDFamilyRBSSequence
Ga0307376_102614763F025462N/AMTTQELQISRNGQYYVSGDVTFTAAQQVAYLVVNEAAVFANLTDLADVDLIAQSNISGATLSVGIIIAPKGGSFIKRVNMTSGSVIAVFA
Ga0307376_102614764F005194N/ASEHPQINTVLKGNIWDVDLTKDVTGVYLIYEVTNIAPNGFNGIDYSIDVFLCDNVTEINTATNEVSVQNECSLIALDMMSIFENYNKASYADKDLNLVLNKTWSIQPFTERFDSLYSGAAVNLSLSTAYGYARCTIPTI
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