Scaffold Ga0307376_10244425

Overview

Basic Information

• Taxon OID: 3300031578
• Scaffold ID: Ga0307376_10244425
• Source Dataset Name: Soil microbial communities from Risofladan, Vaasa, Finland - TR-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1212
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location

• Location Name: Finland: Risofladan, Vaasa
• Coordinates
  • Lat. (^o): 63.0472
  • Long. (^o): 21.7116
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010318	Metagenome / Metatranscriptome	305	Y
F010532	Metagenome	302	N
F032867	Metagenome / Metatranscriptome	179	Y
F078570	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307376_102444251	F010532	GGAG	MNRTLYKKLEDICAREYIINKLSANKFRTFVDFLYDDIRTWDKPMNVSEIDIIHRIEEHMSYMVSSYLTKPYEGISMDEQAL
Ga0307376_102444252	F078570	AGGAG	MVSTRKYTNRRLEFSGGIELMEEYIILEGKVMWAFLNKKDKWGAYGICLIPNKKSLEIVKENKFYNYKEDKGWISLRYTELDVNIYDKQNNLVMNLPYYLGNNSHVKVRCKSFIGKLVNQKCLYLESLQILKHVKIKSDINWETV
Ga0307376_102444253	F010318	AGGAGG	MNVDSDKPRYIECIYEAPITFDLEELGIDWDNVKDYYIKYGTLYVEFKDGSSEEHEGNQGETDWKWSARESILTEDWSLVEGLN
Ga0307376_102444255	F032867	AGGAG	MDDMTQMIDDLIDNHYRVQHLIGTEADESEYLADISEEDDE