NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307376_10188329

Scaffold Ga0307376_10188329


Overview

Basic Information
Taxon OID3300031578 Open in IMG/M
Scaffold IDGa0307376_10188329 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - TR-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1412
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F074558Metagenome / Metatranscriptome119Y
F090056Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0307376_101883292F074558AGGGGGMPALTQAARDYDKAYEQMKYNEAMKSGLELEKLQLDLAKARNEQEMGSPRGRATRAAEVAAFLEQEKQKEVGIPIGQEMGARMTAAGGPGILEATKMQGELDVEARIRDAKRRSMENYLAGEKSLMPTATVDLGGVKRTVLSEQAGRTSADIYGQIYRNQVPQVASTYEAEGYDRDSAIRMASQDVRKELVKASTGGKVVLTGADGLSTISYSNEQAERMWRDPKTPKGIKAQLNNFFGESEEPTASSYIKSRLGR
Ga0307376_101883293F090056AGGMAEALELSSANRIRQLAGMPVEPEPLPKPENPPAWSEIKESEDYKTLTYPEQVDLARKWGEETKLYASTLKDYTPEQDAEIDDFVNTQAVDVPTNVKVAAGAAGLVKGSASVMGGIAGGLGGLAV
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