Scaffold Ga0307376_10142290

Overview

Basic Information

• Taxon OID: 3300031578
• Scaffold ID: Ga0307376_10142290
• Source Dataset Name: Soil microbial communities from Risofladan, Vaasa, Finland - TR-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1665
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location

• Location Name: Finland: Risofladan, Vaasa
• Coordinates
  • Lat. (^o): 63.0472
  • Long. (^o): 21.7116
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018451	Metagenome	235	Y
F026714	Metagenome	197	N
F047310	Metagenome	150	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307376_101422902	F026714	AGGAG	MADKYKKLTIYVSEEQEKVLKDFDVMAIKKEQFPLLHYTVGLISKRLEETHNRMITDVDPNKCDTSTLHLNSQTIE
Ga0307376_101422904	F018451	GGAGG	MSKFIDVKSHNKTVLPKDYKMNKIQHSPKVLEVKNGMLGFEFNGTYIVDPTLDETARFPVSAKTYYNISARDRDRMIKANIKV
Ga0307376_101422905	F047310	AGGAG	MEYTGYIVLKFYDKDTQPIDTNKRLHNTIFLKPEMDIKQKEDSRPEILPIYTSHKEAEADAEWDSSSTNEDYSTIRKVTITIEEETYNTIESERKTLNSLISKYPEDNQAYKDTLKEISWYNKK