NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307376_10103034

Scaffold Ga0307376_10103034


Overview

Basic Information
Taxon OID3300031578 Open in IMG/M
Scaffold IDGa0307376_10103034 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - TR-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2008
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000710Metagenome / Metatranscriptome925Y
F002259Metagenome / Metatranscriptome577Y
F006697Metagenome / Metatranscriptome366Y
F019128Metagenome / Metatranscriptome231Y

Sequences

Protein IDFamilyRBSSequence
Ga0307376_101030341F019128N/AAAAALLTNTVDKQLGAGFAPYTGLLGSVATSMFLKQPVIAAGMAGYAGAKIGQSLLGADSAIGSLLAENAYSVSPSMYLQGFDTPGMAGEGIYASNYTLAGYDVPGM
Ga0307376_101030342F002259AGGMGMSAQDKMLHVANRLGLTSLKDMQGTTRMVYDSITTASTNFTLFKGASQRAFPLTNVGANGNQFQVDEALLVEKIAFFQPSDTDGAIYAGLSGSGFSVKFDLVIGNKTVLKDVACELGGEQAFYNDSGVLSGVIDLEGVGILIPPQVEYYVVAKTYVTPTRVAFSTRLGCYLFGTGALLNFNTTI
Ga0307376_101030343F006697N/AMANQVNKLAYVDSKLGVTLPGQQTTRIIYDSISAVGGQGFFEFFTNFAGKNEFQTNLTTNKLDSAESMVIKSVQIITSSATMNLAPHSNLNITVGNQVVLKDFDPSPNSSGRGLSYDRLHSGQSSENLEIRLITDIVIPPQVNFKVSLQLAPTIAALVEAEDNFTVVLKGYGRIFSAGNS
Ga0307376_101030344F000710N/AMASNMNISYRQGIRNKGFQTTVPTTGATQTLSLSGLAKAFEGIKFSATTAAAPSVAIDAMQLQVTLTINNDVVIDSAIAADLGASAAAGGITSGFPHFVPFPRALTGQDTILLRVTNSSGASQILNTVVYYKNEI
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