Scaffold Ga0307376

Basic Information
Taxon OID	3300031578 Open in IMG/M
Scaffold ID	Ga0307376_10087981 Open in IMG/M
Source Dataset Name	Soil microbial communities from Risofladan, Vaasa, Finland - TR-2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031578 Open in IMG/M

Scaffold ID

Ga0307376_10087981 Open in IMG/M

Source Dataset Name

Soil microbial communities from Risofladan, Vaasa, Finland - TR-2

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2199
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

2199

Total Scaffold Genes

5 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location Name	Finland: Risofladan, Vaasa
Coordinates	Lat. (^o)	63.0472	Long. (^o)	21.7116	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Finland: Risofladan, Vaasa

Coordinates

Lat. (^o)

63.0472

Long. (^o)

21.7116

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000710	Metagenome / Metatranscriptome	925	Y
F010159	Metagenome / Metatranscriptome	307	Y
F031077	Metagenome / Metatranscriptome	183	Y
F036684	Metagenome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307376_100879812	F010159	N/A	MSWQIPTQVEQDIIAGKAVYRTFQTGNGGQSILPVPANSYAVIFGYDFSPAGGGFKVNSITNIEGNTLNSSNIRWFETQQISFYTGTDFYPFIHHVDVKTTTIPHTINASAPDNEVVQFVVYTEEIDNSPIARQVYITSANDITITHGLIQNSFRASSNAIPITNRTPQGLTYGGSAQVINTQTNYGPGGTPLQFMQPSPKDYQDFAFGLLPANADGQAFATPDTVNGLRDSSEFLANVIGFPNQSATNYYLNLHYALYNKTIPETRG
Ga0307376_100879813	F000710	N/A	MAQLSDISYRQGIRSKGFQVSVPTTGANQTLSLSGLAKSFEGILLSSTTGAAPGTIIDPAQLRITLTINNDVCIEEDVAFHYAITSTGSFSGGFPFFIPIPRRLTGQDTILLRVTNTSGATQLLNVTVWYRNEI
Ga0307376_100879814	F036684	N/A	MASQVSKLNYVDAKLGAPTSGQQTTRYIYDTVLPGAGGTNVTFFQNFAGKTQFETNLTTNKLDSMESMVIKSIYLSCFQGDLGSLTVTGHLNLNIFVGNQCVLKDFNPSFNSSSRGLAFDRLHSGVNEARIIEVRLLTDIVIPPQVNFKATLELAENTALVDSKLTLGLKGYGKIFSAGMSF
Ga0307376_100879815	F031077	N/A	SVKFDLVIGNKTVMKDVVVETGGQQAFYNDGAVPSSVLTLEGVGILIPPQVEFYVRASTFFRNSRIASSQRLGCYLFGTSALLNFNTTI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307376_10087981

Overview

Ecosystem & Geography

Associated Families

Sequences