Scaffold Ga0307376_10036454

Overview

Basic Information

• Taxon OID: 3300031578
• Scaffold ID: Ga0307376_10036454
• Source Dataset Name: Soil microbial communities from Risofladan, Vaasa, Finland - TR-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3676
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location

• Location Name: Finland: Risofladan, Vaasa
• Coordinates
  • Lat. (^o): 63.0472
  • Long. (^o): 21.7116
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002260	Metagenome / Metatranscriptome	577	Y
F051963	Metagenome / Metatranscriptome	143	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307376_100364544	F002260	AGGA	MSVPFQRISNATVADIIFYDPAAERRATQMQIDWDTYFNVGSQEILYQLEWGWFPMYVDTVMGGTLYANLPNGQMISAFNPNLLIKNDQTLIRLDTFKAVETFYSSLVSDTSNVNSVDTANYNHALQRYEKEYEKALQLMNFYDLYQDAPNGPTTKLEENWTADSSFFNDNRRFF
Ga0307376_100364545	F051963	AGGAG	VALSNLPLVDKTKIVTYLREVAKIQTPIIEVSANYPSEDSTIAYGIYVDDVTENSRTVNQLGVQSCASMYDAVDEFNILYISYQNDPQSPVILNAINNLAANVNFFDGYTSVEYNRDVTIGNRSEIHTYTFNLTRLEFNNAII