Scaffold Ga0307376_10032083

Overview

Basic Information

• Taxon OID: 3300031578
• Scaffold ID: Ga0307376_10032083
• Source Dataset Name: Soil microbial communities from Risofladan, Vaasa, Finland - TR-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3966
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location

• Location Name: Finland: Risofladan, Vaasa
• Coordinates
  • Lat. (^o): 63.0472
  • Long. (^o): 21.7116
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031255	Metagenome / Metatranscriptome	183	N
F050369	Metagenome / Metatranscriptome	145	N
F077286	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307376_100320832	F031255	N/A	MVKYFNDVVAELQSKGTIFGAEYRKKNGELTKINGRFGVSKFVKGTGTSNPNVLTVWDNNRKRYTSLIPDNIVSLNTNKTKYVKSDEFLIESYE
Ga0307376_100320833	F077286	GAG	MSKYKYTVEWEGDVTNYKQDFDSLEEARIAMLFHRNRNAVIKVIKIDDYA
Ga0307376_100320836	F050369	N/A	MKITEKDLRNWFPRDMRFLHFCAKYYGYSFHNDEVVERANHLAVLNVMRLVNRDQEFENEAHMTGIVMSSFRYAILNSYSNSLSANEKNLQVRNDSELTYGFGDEEYSKYQASAVADTKEINNLVDFVTDYAETNLPYLQRRALVECVIGESTMKELATDTDTSVRKVHLAKQKAIRRVKKLIGALDENEKKYGKEEVNGEYVSPARSKLQIAIQLEPLRRDETRERDYSKAMSFVNTPPKV