Scaffold Ga0307376_10028914

Overview

Basic Information

• Taxon OID: 3300031578
• Scaffold ID: Ga0307376_10028914
• Source Dataset Name: Soil microbial communities from Risofladan, Vaasa, Finland - TR-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4222
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (30.77%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location

• Location Name: Finland: Risofladan, Vaasa
• Coordinates
  • Lat. (^o): 63.0472
  • Long. (^o): 21.7116
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009600	Metagenome	315	Y
F011218	Metagenome / Metatranscriptome	293	N
F014228	Metagenome	264	N
F093771	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307376_1002891410	F093771	N/A	MRTPLTKMTKESADSVITSWSLTGSGLLLSYVHQAFGLAVLVASLGYTLWKWRRDYLKDKGAN
Ga0307376_100289143	F009600	N/A	MRLSDSRQLTYKVVVGKVPSLNAFYASRHWTVRKNAKDKHCDEVLAQLYTMDCVPIHQVHITCLVNYRYDVDNSIMAVKFALDAFKKWGAIRDDSPKYVQQIILIHSEAIAKDTAEIIFEGVILE
Ga0307376_100289144	F011218	AGG	MQYYTNPSKRRKIDFLLEECASVMANCDYDYNSRQQAKYKEQELLGEIAKIDLHFAIQCGYLIPDN
Ga0307376_100289146	F014228	N/A	MNGSTPLKLNPNRLVMWTILLTATLAALSSCATVKPVLQSVIVRDTVIVTKTKYLTDTLELYRDTTIYQDKVRLQLQYIDRKVYVEATCLPDTIRVTQTKILTKEKKQRGWTLEGGLTMLALVLVAAYFVKKWIDKLLE