Scaffold Ga0307376_10025466

Overview

Basic Information

• Taxon OID: 3300031578
• Scaffold ID: Ga0307376_10025466
• Source Dataset Name: Soil microbial communities from Risofladan, Vaasa, Finland - TR-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4557
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location

• Location Name: Finland: Risofladan, Vaasa
• Coordinates
  • Lat. (^o): 63.0472
  • Long. (^o): 21.7116
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F058510	Metagenome / Metatranscriptome	135	N
F076587	Metagenome / Metatranscriptome	118	N
F083373	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307376_100254662	F058510	N/A	MLSQETELSFKVGRYADSLPVEVCVTFAAADSNKRPFIEGTITSPSAQIYDRLNNPATSMRCYCHSDMPLQQQQETVASIKPGTTIRVLAQQPSTKYDNKAFGTLISSFNTFKSENKKLQLLTPGPAQKQTFTVSNMPADLVERMDAKLNDIDVKRTYFLKKLINKFLAGDFDDDFV
Ga0307376_100254666	F076587	GGAG	MAHAQLISYSYSKGSDILHVEAIVDDAVQVLPATQVDPPEFDSAHCEAVILWDEPLDHTNAPTREQVQRMLPWITDWCVIPPIEFDD
Ga0307376_100254668	F083373	N/A	MSTHPFDTSTFASVKLKHVPSYLQNEAADYNLRVAAWFDNYAVNAAQFDAAMADQDKLWKMRTAEGWEADEGGWYTPTGISEHDWEHDYGNPFPEEPVWENYKALKRCTAGWRIDDTGWYSPEGQHESEWTGPLPEYTLL