Scaffold Ga0307376_10006995

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307376_10006995

Scaffold Ga0307376_10006995

Overview

Basic Information
Taxon OID	3300031578 Open in IMG/M
Scaffold ID	Ga0307376_10006995 Open in IMG/M
Source Dataset Name	Soil microbial communities from Risofladan, Vaasa, Finland - TR-2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	9891
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (14.29%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location Name	Finland: Risofladan, Vaasa
Coordinates	Lat. (^o)	63.0472	Long. (^o)	21.7116	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012345	Metagenome	281	Y
F059779	Metagenome / Metatranscriptome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307376_100069952	F012345	N/A	MRFKLTYQVGLAVVQEWIFTSKSLAYWKKMDLLETGRYNDGRFKVTPL
Ga0307376_100069958	F059779	GGA	MDIGLQKIKTGANLWTIKKRIQNARENILKTRPEATDYIKGSEQSEEELLEAISFLTNLYEHAISLSRENTILANRNIELTRIKNELENQIKFNNIHEQL

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