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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031578 Open in IMG/M |
| Scaffold ID | Ga0307376_10001207 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from Risofladan, Vaasa, Finland - TR-2 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 28670 |
| Total Scaffold Genes | 60 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (13.33%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Finland: Risofladan, Vaasa | |||||||
| Coordinates | Lat. (o) | 63.0472 | Long. (o) | 21.7116 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003038 | Metagenome / Metatranscriptome | 511 | Y |
| F006840 | Metagenome / Metatranscriptome | 363 | Y |
| F012010 | Metagenome / Metatranscriptome | 284 | Y |
| F076942 | Metagenome / Metatranscriptome | 117 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0307376_1000120731 | F076942 | N/A | MDSKVIVLADEATGTVINVSENNPEYGYVKLQQVRNVIDDNGFLRRKPVNALLPGTVEDLKMLNLFAGQAMTGKIVIEEALEPFNSKTPARDLKIAGSTGIVCTWQGLPIYRRTKFTFDSVLEDTYQKHDNVDELRAAYANSIKSNTSAIQNAAGQDFTIEG |
| Ga0307376_1000120748 | F012010 | N/A | MNEIFKKLVENNLSPNTYYVLHCIKEKIVPASFVNKALESKKLQSEAWLSEDLQLTSKSIIFMEEINGYFKRTKKKTAKDIMGQNFVDNIKAYVSIFPNRKLSSGKYARVNPKNLEAAFQWFFENYDYEWDIIIQATQKYVREYEVNDFEFMRTAQYFIRKQNIDKSFESDLATYCELIKDKPDDEVVYFKERIL |
| Ga0307376_1000120752 | F003038 | N/A | MALSTTDLSTGGGSGLPKTIQTGNHVLKINKITLEDYQFIDNAKHLVLHVETQPIDGFEGFMIDKDDESKGHFAGQIGRVKASQYAFADGETKSGVKIQRDRSLLIFLQNLCKSLGVNEWFVAQDNKHDTIEDFIKAFAKDAPFTDKYMEFCIAGKEYESKSGYTNYDMWLPKGEGNKYAYGEIEGGKVLKYDEAKHLKKLEVKDVKSFGDDNDFSVPSRTSSDFNLDD |
| Ga0307376_100012079 | F006840 | N/A | MKPFKQLRGRTILVNIPKRKESTIQLSAKDEDMIMQEAVKMWNKLTIYAIGDKVEDVSVGDVVYIRTSSLNMETVERIDIDGEVKLVLNEGDVVIVW |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |