Scaffold Ga0307376_10001092

Overview

Basic Information

• Taxon OID: 3300031578
• Scaffold ID: Ga0307376_10001092
• Source Dataset Name: Soil microbial communities from Risofladan, Vaasa, Finland - TR-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30597
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (14.58%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location

• Location Name: Finland: Risofladan, Vaasa
• Coordinates
  • Lat. (^o): 63.0472
  • Long. (^o): 21.7116
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009787	Metagenome	313	Y
F016797	Metagenome	244	N
F052601	Metagenome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307376_1000109212	F009787	GGA	MQTKPVHHSTYKKNMRIYSLIFVLTLFSCSAKYHYNKAIKRGLQVTQTSDTIRIATIDSIPVIKHDTIVYEHFYSSKDTIIEYKTVYVPQTRLETRIEYKLKRDTLRMITRVEVQRAKAEAKANKKPNYWWMLIFALVFGAVIFLLNKLISKII
Ga0307376_1000109217	F052601	AGCAG	MSYEIEIEYYDQDGAIFYIGETPYQVELFIETRIVDELDSYNSFNDKLSYAQVEETYYRVQKETLRCDGVNYYNEEDLCEELEEILNKWNN
Ga0307376_1000109224	F016797	N/A	MDSLEILKAKINLQTTIIKFTSSIEELQAKHPERKDLIDSMVDSLEDISYFQSVFMQFEDQYLLECKSNLRLQMVISEQKHELEKLNILVKNLKEGI