Scaffold Ga0247727_10246108

Overview

Basic Information

• Taxon OID: 3300031576
• Scaffold ID: Ga0247727_10246108
• Source Dataset Name: Biofilm microbial communities from Wishing Well Cave, Virginia, United States - WW16-25
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1573
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Virginia
• Coordinates
  • Lat. (^o): 38.1667
  • Long. (^o): -79.633
  • Depth (m): 9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F063430	Metagenome	129	N
F068627	Metagenome	124	Y
F068642	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247727_102461081	F068642	AGGAG	MRTRSVCEVPEALRRHNEEQLRDPQTVVHNLGRRVRVVVLWRQRDDDPERWIYLERMPPDDFSYETVKQRWGGGAYRIRVFGAWDRARRQERYITQVAFWI
Ga0247727_102461082	F063430	AGGTGG	MGRARPDLIRVLEENPPGPHAGITLVRRVRTREYRTEIGPRGYLSQIEAAAFLGKSVMAVNRYVRLGLLRDTTRYGISMIQLAELRRFGREYLEGGKGGRLRRGAGAERRRARRS
Ga0247727_102461083	F068627	N/A	VSVGERKDHGLRLDRSPVATGAIEPLLTAAEVGRLLAIPTKRVYEVVGHLAIQLAPHTRRWRLSDIAALIEARRRSK