Scaffold Ga0247727_10082752

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0247727_10082752

Scaffold Ga0247727_10082752

Overview

Basic Information
Taxon OID	3300031576 Open in IMG/M
Scaffold ID	Ga0247727_10082752 Open in IMG/M
Source Dataset Name	Biofilm microbial communities from Wishing Well Cave, Virginia, United States - WW16-25
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3511
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: Virginia
Coordinates	Lat. (^o)	38.1667	Long. (^o)	-79.633	Alt. (m)		Depth (m)	9
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F056194	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247727_100827522	F056194	GGAGG	VKVILEDLTTLPPKRLEKRLEELARDALPCHSATVCDGTPDDGLTVALHVDSRRRGDVLDLGRIVEDDAAVQASCGWSLLAPSRRHPYWRLLLRVSFERPVKCVFTVGFEVRQHPSDPLLTTLPLMLAASRFVFDFDGRLDPDHPLVWITAPVARECVLDLLAATCT

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