Scaffold Ga0247727_10017814

Overview

Basic Information

• Taxon OID: 3300031576
• Scaffold ID: Ga0247727_10017814
• Source Dataset Name: Biofilm microbial communities from Wishing Well Cave, Virginia, United States - WW16-25
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11257
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Virginia
• Coordinates
  • Lat. (^o): 38.1667
  • Long. (^o): -79.633
  • Depth (m): 9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000587	Metagenome / Metatranscriptome	1007	Y
F006489	Metagenome / Metatranscriptome	372	Y
F087833	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247727_1001781411	F006489	AGGAG	MKIIASVLIALSVLAGAAGSANAFDAKAFYEQLDRRAH
Ga0247727_100178146	F000587	AGGAG	MKKIVSALIALSVLAGIAAPAGAFDAKSFFEQQDRQAGGSSR
Ga0247727_100178149	F087833	GGAG	MSIDDADRKRIVQAIRTYIARERISRDEFARRTKLGKSTVDKLVVGIFSEKTVLQIEAQAKISLLGGGPTVEAAGEEFGRYTREDTKNYIGEYVFARPSFQEDGLIHAFHMEIVWDRDASALLVKEVAVGKKVPLQFGKIYVPRASMHLFILSNEQGWLKKVILSQIDVYKRMKGIMLTMGHAFANVYTPVAMPVIMNKYDKIDAGMVGKVDPRSRIYEEYNQDLLAVEQNQFARWIRLKQI