Scaffold Ga0247727_10000112

Overview

Basic Information

• Taxon OID: 3300031576
• Scaffold ID: Ga0247727_10000112
• Source Dataset Name: Biofilm microbial communities from Wishing Well Cave, Virginia, United States - WW16-25
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 178467
• Total Scaffold Genes: 173
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 147 (84.97%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Virginia
• Coordinates
  • Lat. (^o): 38.1667
  • Long. (^o): -79.633
  • Depth (m): 9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F059115	Metagenome	134	Y
F064888	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247727_1000011215	F059115	GGAG	MTPAWTVKDHTGQHRPEFVAASRLEVGRRIVPTHYDAFRLHVSSSYRELFERAVGQVLAREGWQIVKTRVRAQRAAA
Ga0247727_1000011264	F064888	N/A	MVWGKGQAWAAAAIASMLTVGCTQTSRVDDALTTSSLTQSKKAVAIMRVGSASAACVNVAVLLGVREGAGFRRHQGITVMNVRSLTEPAVAEVELDAGEYHVLAYRCQTRAKLHTVSDTDGGQLYRTSYASFRLEPGEVVNLGYLHVGVWRHGRNAISRPLEVDIDVTDWPLVELERFKAKRPHIYAQMKTRLMAVAARQQGPPTSQDCARLKALKAEGKVQRLPDECAAPAAARRGAGTVAK