NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310915_10411619

Scaffold Ga0310915_10411619


Overview

Basic Information
Taxon OID3300031573 Open in IMG/M
Scaffold IDGa0310915_10411619 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)960
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005125Metagenome / Metatranscriptome411Y
F008319Metagenome / Metatranscriptome335Y
F024898Metagenome / Metatranscriptome204Y

Sequences

Protein IDFamilyRBSSequence
Ga0310915_104116192F024898GAGMNVYRAKAFECLSLAECMNNPEERAEMVRFARVWMSFAEPIAEARSAYELPRRS
Ga0310915_104116193F008319AGGVSIVQFRRAKLLQDAKLSGVTVPDIARALASMAGVKALFDYDAGLTDGYLNKAEALLELAIECAHERHNGN
Ga0310915_104116194F005125N/ATAAKAKPKPAPVKKVARKVKQPVTPVIETAAVEMIEQPAPDVITVTEVEETEVRKAS
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