NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310915_10223560

Scaffold Ga0310915_10223560


Overview

Basic Information
Taxon OID3300031573 Open in IMG/M
Scaffold IDGa0310915_10223560 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1321
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006575Metagenome / Metatranscriptome370Y
F007126Metagenome / Metatranscriptome357Y
F029856Metagenome / Metatranscriptome187Y

Sequences

Protein IDFamilyRBSSequence
Ga0310915_102235601F007126AGGAGMAGVINDIEALAEFRAHLMRFNHELAENFATMQAHWRELGEVWRDDMYRLFGEALDEVTPGIATYLS
Ga0310915_102235602F006575GGAGMTTESAMATSPYLSLRQAVRPAILAHRLLAGDQERAGKLATECEDLLYLTGELLKAAGRARILADASPPRMPEESGGDRQAQLLEAYADAGLLWAKVVGSSLALAGVLVERGEWEDVRALASFLASAGEQSAAAELRIQLGREVWETHREPLRAVSNDMGTAAIEPAISALRAVLREVPEEYPDRNREVNRFLPPLASAIHAIMKEQEADIPYHSRVEHIATGGVAKYPDIVQTSLDELAAEFEGICRRPGGKTT
Ga0310915_102235603F029856N/AEISARLVRLADKGPDAGIHVVAWTDGYSTAERALRRAGLGFFGLRAVLRVLSPAESDALLGVSAAASLDDDRALYRDTEWPAEQVEKFKPYSVASLFAFAREGSLTTSGKWSPA
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