NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310915_10189935

Scaffold Ga0310915_10189935


Overview

Basic Information
Taxon OID3300031573 Open in IMG/M
Scaffold IDGa0310915_10189935 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1434
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032401Metagenome180Y
F038595Metagenome / Metatranscriptome165Y
F068176Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0310915_101899353F068176N/AMTRRLHQASMSPQAAQAFLDGLPRMRAALLNSRHILGPVAYARHMHELDTEERDAKAILRRAQLRVVAGTALDE
Ga0310915_101899354F032401AGGAMKPMKLAEVRKHTGCRLTVEEAAQYVSPGQSVTATRNQACALSLHSWSNSPTDWLRLEACIVLLADKRRQK
Ga0310915_101899355F038595AGGAMYTLFSLMIPFALLHHGFNSITLKIISEIRSGLKYWRETSKK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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