NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310915_10062555

Scaffold Ga0310915_10062555


Overview

Basic Information
Taxon OID3300031573 Open in IMG/M
Scaffold IDGa0310915_10062555 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2431
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021696Metagenome217Y
F028397Metagenome191Y

Sequences

Protein IDFamilyRBSSequence
Ga0310915_100625552F021696GAGMPSHCFVWCAISEGCDMLKSVLFRLWLMGSGLWIAALIAMLTPGAAVAEPIIIIIKSLHNLDYARSACSYALANAEEIAECKFAGDGRNLGRKLENEVRSRMATNPRCQGVDVFQQNHSDYDGKNNFNELADQMKQVHWDLYLDYNPGQTTHNWTLFPKTGGVSGGELVINGIVEGEGTVSQIADQICIVVTKRGANIH
Ga0310915_100625554F028397N/AMSDAFDSLDATEKAAIRATLIRCRVLAAKIANELRNKKPEHVVDKSSLAELYASLEYAAGVLEQKRR

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