Scaffold Ga0310915_10006773

Overview

Basic Information

• Taxon OID: 3300031573
• Scaffold ID: Ga0310915_10006773
• Source Dataset Name: Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6460
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013577	Metagenome	270	Y
F028881	Metagenome	190	Y
F096423	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310915_1000677310	F028881	GGTGG	MSKRPTAKQAANEPYWFAKNQEVSKAVTQMTDPEYKVEFDGEEMYVMCNGVKLAVRRDDCWVSIEPGVTVRDIVENGRNGIEVEYRRVTVH
Ga0310915_1000677317	F096423	AGGTGG	MHLGAVEESVCQWCGAGIYLVRVSINNWEWVTDLKQPRATWKCYADAEWPAAHLHQPVLLGRDADSSSSK
Ga0310915_100067739	F013577	GGAGG	MRTSTESRAEECRRLAKLAAKPEDWQHFLEMAATWDMVARQRPSDKLAETWALAEAIANSRNLGLQ