NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318515_10269374

Scaffold Ga0318515_10269374


Overview

Basic Information
Taxon OID3300031572 Open in IMG/M
Scaffold IDGa0318515_10269374 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)913
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030318Metagenome / Metatranscriptome185Y
F051300Metagenome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0318515_102693741F030318N/ANSAAHLVSAARRRLRCRRCTLTYVEAPPAARIWRPWTIWLPCVLAFFWSGFLIFLDVVFALASLLNDNAEPQTGWVYPAVIGQCVLAGASVVALLVGLRSPSRRRTAAITAWMIIPVGLGWLVLIGRLLAGS
Ga0318515_102693743F051300GAGMSPDERRQLAHALAALDKPHPLTDPRMRRRMRFGLLFVTGCCIVLAGWIAILIL

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