NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318515_10005481

Scaffold Ga0318515_10005481


Overview

Basic Information
Taxon OID3300031572 Open in IMG/M
Scaffold IDGa0318515_10005481 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5294
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002476Metagenome / Metatranscriptome555Y
F037010Metagenome / Metatranscriptome168Y
F039440Metagenome / Metatranscriptome163Y

Sequences

Protein IDFamilyRBSSequence
Ga0318515_100054811F037010AGCAGMCLGPDPETTRQVVMLDVFRKERDGGVLWMGTAKDEKQVREMYKTFLTANPGVYFTFDASTQTRRTIEPEEFDGDVET
Ga0318515_100054812F039440N/AMNRTMKVNEEVRVAQVRQLFVAHHSDPAKRTATSVLIFYGWLEQHRPELLPQGKHGDPFQHVRLDLSGLFE
Ga0318515_100054814F002476N/ALIRFSPSLAKVLETKREFKVGEKIRVNLHHGKIEDAVVRAVIHDDDGIKLQVDVVGLELTALIDTRQVVE

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