Scaffold Ga0307489_10014818

Overview

Basic Information

• Taxon OID: 3300031569
• Scaffold ID: Ga0307489_10014818
• Source Dataset Name: Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 1.2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4547
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Alaska
• Coordinates
  • Lat. (^o): 71.3731
  • Long. (^o): -156.5049
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010357	Metagenome / Metatranscriptome	305	N
F050660	Metagenome / Metatranscriptome	145	N
F080042	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307489_1001481810	F050660	GAGG	MKNVIKSTSVKPQAEKTKATLCKEIGEMKNLSQSEMTSLERTSKEMLVKIQAWLTA
Ga0307489_100148183	F010357	AGGAG	MYIDVKYNFRPNPKCRAEVVRYVERMYSLSEVKSKCGQTDVDGGRVLCDACCELADNMERANEL
Ga0307489_100148186	F080042	AGGAG	MKNVRLEMKVKKAQTIASLPFEYNPNDTILRGSATPNHTVGMARAKRLALRGVASVSQPNLYHLRGGK