Scaffold Ga0308393_1005462

Overview

Basic Information

• Taxon OID: 3300031568
• Scaffold ID: Ga0308393_1005462
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050630_ee2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4481
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5387
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050068	Metagenome / Metatranscriptome	145	N
F062336	Metagenome / Metatranscriptome	130	N
F064749	Metagenome / Metatranscriptome	128	N
F079733	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308393_10054621	F050068	N/A	MYILRAVNITYSGLEKTKKSWQNEDMTIAIWYNDRVAITDGVLENIILGDYDPFWERALRLTADEFFRFCADTIDENMYGLNWMTLWRNPDGKLTLFLDREECEVFAYKKGRSIFFFADRDHRMLLAHVVRGRFDIDVTDHGRALVWTRLTLNEQCRKMLGRKMWMSFPHEEYQGWIYNPEVRLIELNIRNLMEEGRWESAVELAAFACSEAKLRNDDAMFQFFYAIIERIQRFWPIDPQLLDKMAWR
Ga0308393_10054622	F064749	AGGA	MNGQQMIQRVDDYVLLYNGSKVALTTRSHVHLDDSFWKRFVLDQRSLFCDSDIMLTNLESSLRWMDVTQVVTDYRHGDLFIRRIADAFIFDVMQDEAVSTIAMCEWKDGRLCHVPIYNYSKCCDVIPWEHLISLWNDAYKQALYDVYGLDDDVCGFDERGWSYQMFMLARDLFEGGRYDDSHELFRCMVARAKMEGNDKLVTKLENLEQKLLAR
Ga0308393_10054623	F079733	N/A	MKDIIICDKGRVTFANASIWHLQDDNWFSELRSAAQWRETCEKELQRLCQSHYWIDVWSLPGDVSLPYDKRLTRVGQWCISRIDKTCDDDQGVRQLVIFTHFDESCISETPTYMRGEDDRLVKLVPGMEEYDDAWGFDDAWRFDDEGWLFYLEDVPRIWNNLYRRRLINAVADELLGLSLTMDWQGRLARLIRRLMSEGNYDDAMQVAACASARFEHEKWPKDNRFVVVHKQMMKVLALNEL
Ga0308393_10054624	F062336	GAGG	MSTIDFSIYKATEPVLTFVRCTWINPHPTKSGTPVEHGGIIWDAAEPVECSGKPFTVTYSSGKTQEVCGGRGFAIVPIRMSNPYTIVTSSDPAMLQQVIVPQPLYMRSDNVPDEFRVSSAVTFFFVLRDDPSNTLMSVQLRSHGATLLNRAYIEWVKTVAKLGNQLLRIPLDVRALPCKFGAGETVMVGRNQKSPIATPIFRALRQYKTADELQSDLVPPERFKALLEMADDDMIKQYPAIPAVKIAPTLDEAYAALGAALKDEQQPKALPAAAKSAKQIVEEGEGDYF