NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308393_1001631

Scaffold Ga0308393_1001631


Overview

Basic Information
Taxon OID3300031568 Open in IMG/M
Scaffold IDGa0308393_1001631 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050630_ee2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10262
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004170Metagenome / Metatranscriptome450Y

Sequences

Protein IDFamilyRBSSequence
Ga0308393_10016312F004170GGAGGMSDPSLFASPLVRQAARNLHTVEWLSENDTWRPDWFCRQYFWRTRRMMAVTPDEAAAWLPALAFAVSCEKDANVLAECAWWPLPEPLPPEAIPWRDALIQVWEQYPAATIRKETIRLAALVCLDRRAERLPEWLREARRALDLVWYDRDLRLAALAGWRPRPGDAPPHGDKAEGAQAWVRFWEERYRTSRSELNGLVAATARLHLAEAGWLPSGPSPERLREEFRQWVQRCPVSYFERSALRMLLASVPADASAPERRQQDIRKWLELTHENVRWEKRELVWEMLAAWQREGILQRCGDGRGRLRDGGRLQKLSLLPDLARALKWEQHGEVLLAMAGYIPGAVEVSAHPKELRAVVARWEALSRNDDWEIRQAAWVARWNLLRAGVLTAKEQGRFGADYVKAIGSENDRDVLLALVQITPPGTFALATWIRQLSHEDDACRLVAGLAIHGRLVDMASSEQRVASSELPLATRHSLLAITRRQMRQALRRAGQEGTDAGTVAPFVNLPPEVWPDFRRLHKIETALAAGQLPPSPDDAAGNRPIPRAVPARLPEAHPRTDPPSITDRTAGRTAGSEPPARHPFPETIRHE
Ga0308393_10016313F004170GGAGMSEHHLAVSPLVRQAARNLRTVEWLSENNTWSSNPSYRWNFWRTRRMMTMTPDEAAAWLPAVAVAVQWDAQTVVFEELTHWPIPEPLPPEAIPWRDALIQSWEQHPAATGWNNFFRLAALVRLDRRVERLPEWLREPRRALNLEWYNRNLRLAALAGWRPRPGDAPPHMGSAGVAQAWVRFWEESYKSPDIDDLIAATALLHLAEAGWLPSGLSPGRLRAEFPQRLRQRMRQYDIPYGDRSVLRMLLFSIPADVSTPERWRRDVTEWLKLTGKDVEWEKREAVWEMLAAWQREGILERCGISLVPDLARTLEWERHDYVLRAMAGYIPGAVEVSAHPEAARAVVARWEALSRGAFFGEVRQAAWVARWNLMRAGVLTAGEQARFTADYVDAIRSEKERAVLLALAQTRPPGSFPLDDWKRRLSDRNNECRLAAGLAIHGWLVDMASGGQRRQMRQALRRAGQEVTGTVAPFVNIPREMLPDFRRLREIETALAAGQMSPPPDAAAKNRATPRAVLARLPEAHPRTGPPGITDRTTGRTAGSEPPARHPFPEVIRHE
Ga0308393_10016314F004170GAGGMSDPSLFASPLVRQAARNLRTVEWLSENNTWRSGWFCRWYFWRTQRMMTMTPDEAAAWLPALAFAVSCEKDANFLDEFARQPLPEPLPPEARPWRDRLIQVWEQYRPATTFEKTIRLAALVRLDRRAERLPEWLTEARQAMDLEPEDRYLRLAALAGWRPRPGDGPPHRDKTGTAEAWVRFWEERYRTPGSEVDGLIAAAALLHLAEAGWLPSGPSPERLREEFRQRVQQVQPWTTSYHEQSVRRMLLASVPADASAPERLRQDIKAWLELTHRNVPPEKREAVWNMLIAWQREGILERCGISLVPDLARTLEWERSDYVLLTMAGYIPGAVEVSAHPKAVQAVVARWEALSRNDDWRIRRVAWVGRWNFLRAGALTTEEQGRFGADDVEAIGSEKAWDVLLTLAQITPRGTFPLAIWTRRLSDQDDWRRLAAHLAIHGWLVEVMEGASGEWRVASGSSLLATRYSLLAITRRQVRQALRRAGQEGMGVGTVAPLVNLPPEVLPDFRRLHEIETALAAGQMPPPDAGAGNRPIPRTVPARLPEAHPRRGPTGITDRTTGRTAGSEPPARHPFPEAVRYE
Ga0308393_10016315F004170GGAGGMSDPSLFVSPLVRQAARNLHRLEVLTANPIWTDMSCRWNFWRTRRMMAMTPDEAAAWLPALAFAVSRENNPDVLAELARQPLPEPLPPEAIPWRDRLIQVWEQYPVAIAWEQYPAAIVWVETIRLAALVRLDRRAERLPEWLTEARRARDLWWYDRDLRLAALAGWRPRPGDGPPHGDKAEAAQAWVRFWEERYRTSRSELNVLVAAAVLLHLAEAGWLPSGPSPEGLREEFRQRMQQVQQWPVSYHERSVLGMLLSSVPADASAPERRQQDIRKWLELIHKNVRWEERELVWEMLAAWQREGILERGGISLVPNLAQTLEWEDYSDVLRAMAGYVPGLAEVRAHPEAMRAVVARWEALSRNDDGGIRQAAWVTRWNLLRAGVLTAEEQGRFGSDYVKAIGSKDDRELLALAQITPPGTFPLTTWAGRLSDQGDRRRLARRLAAQLAIHGWLVEVMEGASGEWRVASGSSLLATRYSLLATHRRQVRQALRRAGQEGTDAGTVTPFVNLPPDVLPDFRRLREIETALAAGQMPPPATAAGTGNRPAPCTVPARLPETQPRRGPPGNTDRAAGAEPPVRHPFPETIRHE
Ga0308393_10016316F004170GGAGMSEHHLAVSPLVCQAARNLHTVEWLSGNDTWRFNWLYRWNFWRIRRMMAVTPDEAAAWLPALAFAVSCEKDADVLAELARQPLPEPLPPEARPWRDRLIQVWEQYPAATTWEKTIHLAALVRLDQQVERLPEWLREARRALDLWWYERYSRLAALAGWRPRPGDAPPHGEKAEATQAWVRFWEKRYRTFGSALDGLIAAAALLHLAEAGWLPSGPSPERLREEFRRRVRQYPISYDDRSVLRMLLSSISADVSTPERWRRDVTEWLKLTGKDVDGDKREAVWDMLAAWQREGVLERCGIDREQLQELSLLPDLARALEWEQNGEVLRAMAGYVPGAVEVSAYQEAARAVIARWEALSRNGYWEFRRAAWVARWNLRRAGALTAEEQTRFGADYVEAIGSEDDRDVLLTLAQTRPPGSFPLDDWKRRLSDRNNECRLAAGLAIYGWLVDMASSEQRVASRELPLATSHSPLASEPLTTRYSLLAITRRQVRQVLRRAGQDTDAGTVAP
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