Scaffold Ga0308393_1001504

Overview

Basic Information

• Taxon OID: 3300031568
• Scaffold ID: Ga0308393_1001504
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050630_ee2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10810
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5387
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004170	Metagenome / Metatranscriptome	450	Y
F009196	Metagenome / Metatranscriptome	321	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308393_10015043	F004170	GGAGG	MSDPSLFVFPLVRQAARNLHTVEWLSENNIWRPDWFCRQYFWSTRRMMAMTPDEAAAWLPALAFAVSCEKDANVLAELARQPLPEPLPREARPWRDALIQAWEQYPAATAWRKTIRLAALVRLDRRVERLPEWLREARRALDLEPEDRHFHLAALAGWRPRPGDGPPHGSKAEAAQAWVRFWEKRYRPPSSKLDGLIAATALLHLAEAGWLPSGPSPERLREEFRQRVQQWPVSYFELSVLRMLPASVPADASALERRRQDIKAWLELTHRNVQWGKRELVWEMLAAWQRESVLEHSGRGRLPEPPRLLPDLACALKWERDSHVLRAMAGYVPDLAEVRAHPKAVRAIIARWEALSQSDNWLIRQAAWVGRWNLRRAGVMTAREQARFTANYVDAIRSEKERAVLMALVQIQPPGTFPLATWAGRLSDQNDWRRLAAHLAIHGWLVEVAGGGQRRQVRQALRRAGQEGTDAGMVAPFVNLPPEVLPDFRRLHEIETALAAGQMPPRPDAAAENRSAPRVVPARLPEAHPRTVPPGITDRTAGRTAGSEPPARHPFPEVIRHE
Ga0308393_10015044	F004170	GGAGG	MSNPSLSPLVRQAARNLNTVEWLSENDTWRSAWLCRRDFWRTRRMMARTPDEAAAWLPALAFAVSCEKDANVLPEFDWWPLPDPLPPEALPWRDRLIRSWEQCRPATTWEKTIRLAALVRLDRRVERLPEWLTEARRALDLGWCDRPSRLAALAALAGWRPRPGDGPPHGDKAEAAQAWVRFWEKRYRTPGSELDGLIAATARLHLAEAGWLPSGPSPERLREEFRQRVQQWPVSYRERSVLPMLLASVPADASAPERLRQDIKAWLELTHRNVQWEKREAVWDMLAAWQREGVLERGGIGRGQLQELSLLPALARTLEWERDDDVLRAMAGYVPGLTEVRAHPEAMRAIIARWEALSRNDYLGIPHAAWVARWNLRRAGVLTAEEQARFDADYVEAIGAENDRDVLLALARITPPGTFPLAIWTRRLSDQDDRCRLAAHLAIHGWLVDMASGGQSRQVRQVLRRLGQEGTDARTVAPFVNLPPEVLPDFRRLREVETALAAGQMPPPDAGKGKRKRMGQLATLARLPEAHPRTDPTGITDRTTGRTAGSDPQARHPFPEVIRHE
Ga0308393_10015046	F004170	GGAGG	MSDPSLFASPLVCQAARNLRTVEWLSENNTWSSDSSYRWNFWSTRQMMAVTPDEAAAWLPAMAFAISCESDAPFLSELARWPIPERLPPEAIPWRDRLIRSSEQYRPATAWRKTIRLAALVRLDRRVERLPEWLAEARRALDLVWYDRPSRLAALAGWRPRPGDGPPHGDKAEAAQAWVRFWEERYRTSRSEPDGLIAAAALLHLAEAGWLPSGPSPERLREEFRQRVQQWPVSDLERSVLPMLLASVPADASAPERRQQDIMAWLELTHRNVQWEKREAVWRMLAAWQREGVLERSGRGRLPEPPLLLPLARALEWEEDGEVLLAMMRYVPEAAEVSAYPEAARAVVARWEALSRNGNWLFRREAWGARWNLMRAGVLTVEEQARFGADYVEAIGAENDRDVLLALAQITPPGTFPLAIWTRRLSDQDDRCRLAARLAIHGWLVEVAGGGQRIASSGQRVASNSEASGEQRVASRELPLATHHSPLAITRRQVRQVLRRAGQEDTDAGTVTPFVNLPPEVLPDFRRLHEIETALAAGQMPPPPDAAAENRATPRAVPARLPEAHPRTGPPGITDRTTGRTADSDPKARHPFPEVIRHE
Ga0308393_10015047	F004170	GGAG	MSEHHLAVSPLVCQAARNLHTVEWLSGNDTWRSAWSCRWYFWRTRRMMARTPDEAAAWLPALAFAVSCEKDDDVLAELARQPLPEPLPPEALPWRAALIRSWEQQRAATSWGKTVRLAALVWLDRRAERLPEWLREARRVPDLVWYDRPLCLAALAGWRPRPGDTPPHGDKAKAAQAWVRFWEERYRTSGSGLEGLIATAALLHLAEAGWLPSGLSPERLRAELRQRVRQCLISYDDRPVLTMLLSSVPADASAPVRLRQDIKAWLELTRGDVDWKKREAVWDLLAAWQREGVLERCGGSLAPDLARALEWEDYGDVLIAMAGYVPGLAEVSAHPEAARAVVARWEALSRETFFGGVRQAAWVARWNLRRAGALTAEEQGRFGADYMDAIRSEKEQAVLLALAQITPLGTFPLAIWTRRLSDRNNECRLAAGLAIHGWLVDMASGGQRRQVRQALRRAGQEGAGNRPVAPFVNLPPEVLPDFRRLHEIETALAAGQMPPPPDAAAENRATPRAVPARLPEAHPRTGPPGITDRTTGRTADSDPKARHPFPEVIRHE
Ga0308393_10015048	F009196	N/A	PVAPFVNLPPEVWPDFRRLREIETALAAGQMPPPPDAAAENRSVPRVVPARLPEAYPRTDLPGNTDRAAGAEPPVRHPFPETIRHE