Scaffold Ga0308391

Basic Information
Taxon OID	3300031567 Open in IMG/M
Scaffold ID	Ga0308391_1010197 Open in IMG/M
Source Dataset Name	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20050623_t1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20050623_t1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2577
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

2577

Total Scaffold Genes

3 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5341	Long. (^o)	-110.798	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wyoming

Coordinates

Lat. (^o)

44.5341

Long. (^o)

-110.798

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F024968	Metagenome / Metatranscriptome	203	Y
F072811	Metagenome	121	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0308391_10101971	F024968	GGGGG	MQPKVCLVLLSLGFFNRAWTQILRNLGIDYTLCIATGSATTASIQTPQGVFSPSSPDLRNYFRQFDAVILCDNRVDITVNSFINYSVFWLSWNDPEDPAFLFFNPHFSTAITESAYNNNFPSDFPIVRPDPSDIPNTLYAADGGSAGSLTPLAAALTNARGACVLFVAEDIRAYVMTVCNTNSNIPYFWRLNTAKHSTLASTTYTHRVARNGRAGEILAVPAPPTSSEDTETYPADCVVAYRYRNIFW
Ga0308391_10101973	F072811	N/A	PIVAFTHKQSATVSFDRLDGSDWVAWNSAQSPLQARAVVQLTTDNPVYTPVVVGYFMRCAPQIAERATTPVLAERVLELELTKDEYAREEGYADCLIESDATRRIAQRGDTTYRLEYRTRDADPWQTLSEGFAIVESITPMRRRPDKFPYRVRFALRGMWSRFGEIYQLASTAFDGVALGDAFNKLLEGCGFERISSPPVELQALRMPAAPAGDTGSGWRYAPRVGQSGEEILRTLLLFATATGNEWRLRWDYDTGKWVLESKPDELPAWTLLDAGGVDPALREYRYSELEITPRPPEANIVYVEGATAPSKEGERLVVVLVNEDSLTEPDSLDYLGRYKLLRVQADTLSDLDAVQRLAERLYDAAARHATEAQARLPLPPVYDAALLELLSPPRRVQVLEGSNALLDGWVKRATLTASGGSQPRAELLLHISTRYAGDPRD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0308391_1010197

Overview

Ecosystem & Geography

Associated Families

Sequences