Scaffold Ga0307378_10249840

Overview

Basic Information

• Taxon OID: 3300031566
• Scaffold ID: Ga0307378_10249840
• Source Dataset Name: Soil microbial communities from Risofladan, Vaasa, Finland - UN-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1707
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location

• Location Name: Finland: Risofladan, Vaasa
• Coordinates
  • Lat. (^o): 63.0472
  • Long. (^o): 21.7116
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003714	Metagenome / Metatranscriptome	472	Y
F014261	Metagenome	264	Y
F105031	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307378_102498401	F014261	N/A	IALSFVLIFGWLAIVTFYGPELYRAINGPEPVKAKVHRHR
Ga0307378_102498402	F003714	N/A	MPNAHHPYTDHLTFAGRPIPLKRPMAVYAAVRLQAILPQIAALNAAGKTQADAADALDTTVQTLRKWIEITGTKWTNLKARGPYKTPHA
Ga0307378_102498403	F105031	N/A	MPDPSHRPYQPMTIIRPHDKPALWWLFPWSYASTLHTAANALRSLSDRQDKALEMQAHIIADQSEEIANLRRRVEDLNEAIIRGKAITPDAHPHE