NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307378_10207172

Scaffold Ga0307378_10207172


Overview

Basic Information
Taxon OID3300031566 Open in IMG/M
Scaffold IDGa0307378_10207172 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - UN-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1921
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049595Metagenome / Metatranscriptome146N
F067690Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0307378_102071724F067690GGAGGMDNPLYMGRMIQLELKLRDGGSYYLCDTKFSVTSGRIRRQINAIEHVVEHYALVNGIAVKHSYEEVVEMIRKAKGVA
Ga0307378_102071725F049595AGGGGGMQQVDYRFENHGSIFLCQPLNGAAKDNLDQACEGTDDFHIRWGNALVIDHRFAND

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