Scaffold Ga0307379_11019918

Overview

Basic Information

• Taxon OID: 3300031565
• Scaffold ID: Ga0307379_11019918
• Source Dataset Name: Soil microbial communities from Risofladan, Vaasa, Finland - UN-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 703
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location

• Location Name: Finland: Risofladan, Vaasa
• Coordinates
  • Lat. (^o): 63.0472
  • Long. (^o): 21.7116
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037124	Metagenome / Metatranscriptome	168	N
F087136	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307379_110199181	F087136	N/A	QVESSDMYFYNIHRCNFFANAIVMGKVERTINAAPRRITLAAYCLPRVANKDAVRVYE
Ga0307379_110199182	F037124	GAGG	VIEIIAAVSAAGKAFNYIQQAVNKGHEINDLAHKFGAFFDAKDKIGEVEAGVENASAMSKLFAKGSVENAALQITMAKQKTMQMERQLREIITYTVGQEVYVEMLRTRATIRKQRLEAARAKAARKRLIIDGIGFGFLGIILFACIMAVVGVLV