Scaffold Ga0307379_10663441

Overview

Basic Information

• Taxon OID: 3300031565
• Scaffold ID: Ga0307379_10663441
• Source Dataset Name: Soil microbial communities from Risofladan, Vaasa, Finland - UN-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 943
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location

• Location Name: Finland: Risofladan, Vaasa
• Coordinates
  • Lat. (^o): 63.0472
  • Long. (^o): 21.7116
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006619	Metagenome / Metatranscriptome	368	Y
F043890	Metagenome / Metatranscriptome	155	Y
F074791	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307379_106634411	F006619	N/A	GFKPWCIHLTWFNKYRELLCKRTEVRNASPSGAPDKCVAWWYAPPADHTSDGRFVLLHTKSGAQSPLSHWRTYKPNETFTQKDAWTLFFNMMEAGYAPFPGTSLPQLKNAFKK
Ga0307379_106634413	F043890	AGGAGG	MQNNSSNPIAKLNSIEKLQIEWIDEPDGTGTICIDWDETDPDLQWWTDLGPKGQEAFIIDSLYAALECYVD
Ga0307379_106634414	F074791	N/A	MLLLSAMSIDTYGLPSEQYEEFFEDNVTFAAKLYVKACQILRDNGAGAIDFKTTLDLYQEAIYGTNDDCRKYQKVNNPEAIKDNDLFSLTPSREELMQEIQAV