Scaffold Ga0307379_10566209

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0307379_10566209

Scaffold Ga0307379_10566209

Overview

Basic Information
Taxon OID	3300031565 Open in IMG/M
Scaffold ID	Ga0307379_10566209 Open in IMG/M
Source Dataset Name	Soil microbial communities from Risofladan, Vaasa, Finland - UN-2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1048
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location Name	Finland: Risofladan, Vaasa
Coordinates	Lat. (^o)	63.0472	Long. (^o)	21.7116	Alt. (m)		Depth (m)	1
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031053	Metagenome	183	Y
F064209	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307379_105662092	F031053	AGAAGG	MRQNENHENYGLYITQNTYQMKWYCFDRKAADDYWNGKPCKKAVGDTQQEALSNYKNGKFCNEH
Ga0307379_105662094	F064209	AGGA	VAKKIEQEHGGVINRFEKGDVGNPKGRPKNVETLLKEHFLDEHNVKLSKGQVQDIIKNVLSKSRSELVELAKNDQLPFWIALIAKKAQRDYEKGS

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.