NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307379_10381258

Scaffold Ga0307379_10381258


Overview

Basic Information
Taxon OID3300031565 Open in IMG/M
Scaffold IDGa0307379_10381258 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - UN-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1359
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047658Metagenome149N
F101003Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0307379_103812583F047658GAGVEVRTITDYLKQDPEWAKILSMDKNEVLLFIAERLDKITMMEQGRYSGKITREEQKLYQEAWSYIDPKAKVCFTCGRSPQLMSAALLNFYQLQTESVETEKPKRIRKRRESK
Ga0307379_103812584F101003N/ANLETTTMLYILSALSASVLSYLWIEVLAIDLLLKKWMGMYESQSLKPLDCRLCMSFWLGVAMCCFHEPEALLYVPLLSVFFERLMWRFEL

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