Scaffold Ga0307379_10165953

Overview

Basic Information

• Taxon OID: 3300031565
• Scaffold ID: Ga0307379_10165953
• Source Dataset Name: Soil microbial communities from Risofladan, Vaasa, Finland - UN-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2301
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location

• Location Name: Finland: Risofladan, Vaasa
• Coordinates
  • Lat. (^o): 63.0472
  • Long. (^o): 21.7116
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001283	Metagenome / Metatranscriptome	731	N
F014130	Metagenome / Metatranscriptome	265	N
F057991	Metagenome / Metatranscriptome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307379_101659531	F001283	N/A	MTTQEAKETLNKPMICKEAERSIREMKIRLSKYTGDKTEQTKHLSNLDNLLNLAHKQAINLDTYEDLLATYLFKIGEQQAKIRELVEMHAISEHIHEVGIDEVVKDFKSKIQLR
Ga0307379_101659532	F014130	N/A	MNAMEKRYTFELVLNLDDKYYTTNLMAGYGSNPDNAMDNLKAKLNNQFMMLKEDNYNFTIGSIKHITP
Ga0307379_101659533	F057991	N/A	MKIESMNIQTVLDYINNNNHYQYEVVINYNQYHYITNVMRSCGKDEPEALEALKQKLSKKMEKLKDNRGEYKVESIKLI