Scaffold Ga0307379_10144301

Overview

Basic Information

• Taxon OID: 3300031565
• Scaffold ID: Ga0307379_10144301
• Source Dataset Name: Soil microbial communities from Risofladan, Vaasa, Finland - UN-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2511
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Falkowbacteria → Candidatus Falkowbacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location

• Location Name: Finland: Risofladan, Vaasa
• Coordinates
  • Lat. (^o): 63.0472
  • Long. (^o): 21.7116
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041161	Metagenome / Metatranscriptome	160	N
F083616	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307379_101443014	F083616	N/A	MFLQLHDGPDMPYGTSAYPYPKKSGPMMPVRFAEDPFAPGSPVMRTTPYRLLAGCDQAQVYADFVPQNANGWEVRLNQVSQSQQLVKNYQTLRAAAGTGSAPIYSADGTITGFQQATKAQEVAAYIQLGLKALQLAQQGVRAGEARRLKEDAQKLYNENKWGIADVCNQTLVMLQNNAQNCYDSLNWWLKDQGTPGKTAGQKRIANRSVVIRQNALVILVKEIEARGGSFTPGGKGAAPVGIAAILALVAGAAFLKF
Ga0307379_101443015	F041161	GAG	MSKQVADSIEFANDFLPARTTCQEIWYILKDNLIYRNDPPGIELLQSFPSLMEDNYWGIPGAGDCDCFTIAALSCAKARNIPARAVIVGNSSQAPTHIYAQLFNGSKFIDFDLVSSSYGTTKAYKNKQIIKLH