Scaffold Ga0307379_10116738

Overview

Basic Information

• Taxon OID: 3300031565
• Scaffold ID: Ga0307379_10116738
• Source Dataset Name: Soil microbial communities from Risofladan, Vaasa, Finland - UN-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2863
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location

• Location Name: Finland: Risofladan, Vaasa
• Coordinates
  • Lat. (^o): 63.0472
  • Long. (^o): 21.7116
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002197	Metagenome / Metatranscriptome	584	Y
F078417	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307379_101167382	F078417	AGGA	MTSNPLSSDFSYKKYSLEQLDNWVHDSLNCEDLTPQDIYDTIVKCVDESVECHKKYLTKSIELLSLLKGHREVDFGVGNDEPWDYTATGERFPRVTNNDWENFWAAENNSQYTEEELDAMCERAATENDKEACREYNLREAEYYNKRAQLDMQTRVDGYSYSTNKDKKSYDEMIADGWTMTDDGFWIKN
Ga0307379_101167383	F002197	GGA	MYTLKLLAPFVAALCMEGLTTGQGDYCVIDNQPPNVVKYYEPRKSCYVNGTFYKKCEDRNGTI