NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307379_10045958

Scaffold Ga0307379_10045958


Overview

Basic Information
Taxon OID3300031565 Open in IMG/M
Scaffold IDGa0307379_10045958 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - UN-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5068
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (95.24%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003051Metagenome / Metatranscriptome510Y
F005591Metagenome / Metatranscriptome395Y
F010318Metagenome / Metatranscriptome305Y
F010532Metagenome302N
F020816Metagenome / Metatranscriptome222N
F035272Metagenome / Metatranscriptome172N

Sequences

Protein IDFamilyRBSSequence
Ga0307379_1004595811F010532GAGMNKTLYKKLEDICAREYIINKLSANKFRTFVDFLYDDIRTWDKPMNVSEIDIIHRIEEHMSYMVSSYLTKPYEGISMDEQALRGA
Ga0307379_1004595813F010318AGGAGGMMNVDSDKPRYIECIYEAPITFDLEELGIDWDNVKDYYIKYGTLYVEFKDGSSEEHEGNQGETDWKWSAQENILTEDWTLVEGLNXCINI
Ga0307379_1004595815F035272GGAGGMTYKQWCNLRELLTTLSDEVDSKVCDDKVSEAFDDVWDMVDEIDTTQEITXR
Ga0307379_1004595816F020816AGGAGGMKVYEITVSTTVQIDSLDDYAESKEHAIDIMWDRWGVYKDTLEITEVKTWEEDNDI
Ga0307379_100459583F005591GGAGGMNLYFKPTTLDKQIGWTWKDMDKAYWDTWIPKKSDIQIVTRLNKEQKKQVLDELWEDLQSAIQFTRDRNNSRRRQKRLDKNNQTXYNCTT
Ga0307379_100459587F003051GAGGMKTKILKSKVVIDMSVSEYDTLFKYINKLSNMLSTLHETNDLWLSDVHNLSSLQWELVEMLNAEWNPDTYRYVKRGTKX
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